Phylo Lab Papers

Recent & Forthcoming Papers

Moore, B. R., Höhna, S., May, M. R., Rannala, B., and Huelsenbeck, J. P. 2016. Critically evaluating the theory and performance of Bayesian analysis of macroevolutionary mixtures. Proceedings of the National Academy of Sciences, 113(34): 9569–9574.

May, M. R. and Moore, B. R. 2016. How well can we detect lineage-specific diversification rate shifts? A simulation study of sequential AIC methods. Systematic Biology, 65(6): 1076–1084.

May, M. R., Höhna, S., and Moore, B. R. 2016. A Bayesian approach for detecting the impact of mass-extinction events on molecular phylogenies when rates of lineage diversification vary. Methods in Ecology and Evolution, 7(8): 947–959.

Moore, B. R., McGuire, J., Ronquist, F., and Huelsenbeck, J. P. 2016. Bayesian analysis of partitioned data. Systematic Biology (accepted). arRxiv

Santini, F., May, M. R., Carnevale, G., and Moore, B. R. 2016. Bayesian inference of divergence times and feeding evolution in grey mullets (Mugilidae). PLOS ONE (accepted). BioRxiv

Höhna, S., Landis, M. J., Heath, T. A., Boussau, B., Lartillot, N., Moore, B. R., Huelsenbeck, J. P., and Ronquist, F. 2016. RevBayes: Bayesian phylogenetic inference using graphical models and an interactive model-specification language. Systematic Biology65(4): 726–736.

Höhna, S., May, M. R., and Moore, B. R. 2015b. TESS: Bayesian inference of lineage diversification rates from (incompletely sampled) phylogenies in R. Bioinformatics, 32(5): 789–791.

Alkhamis, M. A., Moore, B. R., Martinez-Lopez, B., and Perez, A. M. 2015. Bayesian phylogenetic analysis of a recent outbreak of H5N1 highly pathogenic avian influenza in Europe. Viruses, 23(6): 3310–3328. BioRxiv

Magee, A. F., May, M. R., and Moore, B. R. 2014. The dawn of open access to phylogenetic data. PLOS ONE, 9(10): e110268. arRxiv

Thomson, R. C., Plachetzki, D. C., Mahler, D. L., and Moore, B. R. 2014. A critical appraisal of the use of microRNA data in phylogenetics. Proceedings of the National Academy of Sciences, 111(35): E3659–E3668. BioRxiv

Heath, T. A. and Moore, B. R. 2014. Bayesian inference of species divergence times. In L. K. Ming-Hui Chen and P. Lewis, editors, Bayesian Phylogenetics: Methods, Algorithms, and Applications, pages 487–533. Sinauer Associates, Sunderland, MA.

Brandvain, Y. G. B. Pauly, M. R. May, and M. Turelli 2014. Explaining Darwin's corollary to Haldane's rule: The role of mitonuclear interactions in asymmetric postzygotic isolation among toads. Genetics, 197: 743–747.

Landis, M. J., Matzke, N. J., Moore, B. R., and Huelsenbeck, J. P. 2013. Bayesian analysis of biogeography when the number of areas is large. Systematic Biology, 62(6): 789–804.

Melters D. P., Bradnam K. R., Young H. A., Telis N., May M. R., Ruby J. G., Sebra R., Peluso P., Eid J., Rank D., Fernando Garcia J., DeRisi J., Smith T., Tobias C., Ross-Ibarra J., Korf I. F., Chan S.W.-L. 2013. Patterns of centromere tandem repeat evolution in 282 animal and plant genomes. Genome Biology, 14: R10.